IPB publications - 2011

Qin L, Ren L, Zhou Z, Lei X, Chen L, Xue Q, Liu X, Wang J, Hung T: Rotavirus nonstructural protein 1 antagonizes innate immune response by interacting with retinoic acid inducible gene I. Virol J 2011, 8:526. Lu S, Zhang X, Zhu Y, Kim KS, Yang J, Jin Q: Complete genome sequence of the neonatal-meningitis-associated Escherichia coli strain CE10. J Bacteriol 2011, 193(24):7005. Yang F, Zhang T, Hu Y, Wang X, Du J, Li Y, Sun S, Sun X, Li Z, Jin Q: Survey of enterovirus infections from hand, foot and mouth disease outbreak in China, 2009. Virol J 2011, 8:508. Zhao L, Liu L, Leng W, Wei C, Jin Q: A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF. BMC Genomics 2011, 12:528. Wu Z, Xue Y, Wang B, Du J, Jin Q: Broad-spectrum antiviral activity of RNA interference against four genotypes of Japanese encephalitis virus based on single microRNA polycistrons. PLoS One 2011, 6(10):e26304. Ren X, Wang YC, Wang Y, Zhang XS, Deng NY: Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation. BMC Bioinformatics 2011, 12:409. Zhang Y, Zhang H, Zhou T, Zhong Y, Jin Q: Genes under positive selection in Mycobacterium tuberculosis. Comput Biol Chem 2011, 35(5):319-322. Xi X, Han X, Li L, Zhao Z: gammadelta T cells response to Mycobacterium tuberculosis in pulmonary tuberculosis patients using preponderant complementary determinant region 3 sequence. Indian J Med Res 2011, 134:356-361. Liu Y, Wei H, Qu J, Wang J, Hung T: Prefibrillar aggregates of yeast prion Sup35NM and its variant are toxic to mammalian cells. Neurol Sci 2011, 32(6):1147-1152. Guo L, Gonzalez R, Xie Z, Zhou H, Liu C, Wu C, Paranhos-Baccala G, Vernet G, Shen K, Jin Q, Wang J: Bocavirus in children with respiratory tract infections. Emerg Infect Dis 2011, 17(9):1775-1777. Zhao R, Cui S, Guo L, Wu C, Gonzalez R, Paranhos-Baccala G, Vernet G, Wang J, Hung T: Identification of a highly conserved H1 subtype-specific epitope with diagnostic potential in the hemagglutinin protein of influenza A virus. PLoS One 2011, 6(8):e23374. Cai P, Hou N, Piao X, Liu S, Liu H, Yang F, Wang J, Jin Q, Wang H, Chen Q: Profiles of small non-coding RNAs in Schistosoma japonicum during development. PLoS Negl Trop Dis 2011, 5(8):e1256. Cui S, Wu C, Zhou H, Zhao R, Guo L, Wang J, Hung T: Secretory expression of all 16 subtypes of the hemagglutinin 1 protein of influenza A virus in insect cells. J Virol Methods 2011, 177(2):160-167. Yang J, Yang F, Ren L, Xiong Z, Wu Z, Dong J, Sun L, Zhang T, Hu Y, Du J, Wang J, Jin Q: Unbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach. J Clin Microbiol 2011, 49(10):3463-3469. Wang J, Fan T, Yao X, Wu Z, Guo L, Lei X, Wang M, Jin Q, Cui S: Crystal structures of enterovirus 71 3C protease complexed with rupintrivir reveal the roles of catalytically important residues. J Virol 2011, 85(19):10021-10030. Zhou Z, Xue Q, Wan Y, Yang Y, Wang J, Hung T: Lysosome-associated membrane glycoprotein 3 is involved in influenza A virus replication in human lung epithelial (A549) cells. Virol J 2011, 8:384. Yang F, Du J, Hu Y, Wang X, Xue Y, Dong J, Sun L, Li Z, Li Y, Sun S, Jin Q: Enterovirus coinfection during an outbreak of hand, foot, and mouth disease in Shandong, China. Clin Infect Dis 2011, 53(4):400-401. Shi D, Li L, Zhao Y, Jia Q, Li H, Coulter C, Jin Q, Zhu G: Characteristics of embB mutations in multidrug-resistant Mycobacterium tuberculosis isolates in Henan, China. J Antimicrob Chemother 2011, 66(10):2240-2247. Wu C, Lei X, Wang J, Hung T: Generation of a replication-deficient recombinant human adenovirus type 35 vector using bacteria-mediated homologous recombination. J Virol Methods 2011, 177(1):55-63. Li W, Zhang L, Wu Z, Pickles RJ, Samulski RJ: AAV-6 mediated efficient transduction of mouse lower airways. Virology 2011, 417(2):327-333. Lei X, Sun Z, Liu X, Jin Q, He B, Wang J: Cleavage of the adaptor protein TRIF by enterovirus 71 3C inhibits antiviral responses mediated by Toll-like receptor 3. J Virol 2011, 85(17):8811-8818. Zhu W, Jiao Y, Lei R, Hua W, Wang R, Ji Y, Liu Z, Wei F, Zhang T, Shi X, Wu H, Zhang L: Rapid turnover of 2-LTR HIV-1 DNA during early stage of highly active antiretroviral therapy. PLoS One 2011, 6(6):e21081. Yang Y, Li X, Zhou F, Jin Q, Gao L: Prevalence of drug-resistant tuberculosis in mainland China: systematic review and meta-analysis. PLoS One 2011, 6(6):e20343. Zhang Y, Jin Q: Differential responses of infectious diseases to economic growth in China. Int J Infect Dis 2011, 15(8):e578-579. Ren L, Gonzalez R, Xie Z, Xiong Z, Liu C, Xiang Z, Xiao Y, Li Y, Zhou H, Li J, Yang Q, Zhang J, Chen L, Wang W, Vernet G, Paranhos-Baccala G, Shen K, Wang J: Human parainfluenza virus type 4 infection in Chinese children with lower respiratory tract infections: a comparison study. J Clin Virol 2011, 51(3):209-212. Meng S, Liu Z, Xu L, Li L, Mei S, Bao L, Deng W, Lei R, Xie L, Qin C, Zhang L: Intranasal immunization with recombinant HA and mast cell activator C48/80 elicits protective immunity against 2009 pandemic H1N1 influenza in mice. PLoS One 2011, 6(5):e19863. Si Y, Liu X, Cheng M, Wang M, Gong Q, Yang Y, Wang T, Yang W: Growth differentiation factor 15 is induced by hepatitis C virus infection and regulates hepatocellular carcinoma-related genes. PLoS One 2011, 6(5):e19967. Hu YF, Yang F, Du J, Dong J, Zhang T, Wu ZQ, Xue Y, Jin Q: Complete genome analysis of coxsackievirus A2, A4, A5, and A10 strains isolated from hand, foot, and mouth disease patients in China revealing frequent recombination of human enterovirus A. J Clin Microbiol 2011, 49(7):2426-2434. Wang WZ, Tang JL, Hu YH, An JG, Wang YL, Ren ZH, Zhang H, Griffiths S: Gap between evidence and physicians' knowledge and practice regarding hypertension and its drug treatment: a survey in a Chinese city. Chin Med J (Engl) 2011, 124(8):1235-1241. Xi X, Zhang X, Wang B, Wang J, Huang H, Cui L, Han X, Li L, He W, Zhao Z: A novel strategy to screen Bacillus Calmette-Guerin protein antigen recognized by gammadelta TCR. PLoS One 2011, 6(4):e18809. Ren X, Zhou X, Chang CC: The network properties of myelodysplastic syndromes pathogenesis revealed by an integrative systems biological method. Mol Biosyst 2011, 7(6):2048-2054. Piao X, Cai P, Liu S, Hou N, Hao L, Yang F, Wang H, Wang J, Jin Q, Chen Q: Global expression analysis revealed novel gender-specific gene expression features in the blood fluke parasite Schistosoma japonicum. PLoS One 2011, 6(4):e18267. Peng J, Yang J, Jin Q: An integrated approach for finding overlooked genes in Shigella. PLoS One 2011, 6(4):e18509. Cui S, Wang J, Fan T, Qin B, Guo L, Lei X, Wang M, Jin Q: Crystal structure of human enterovirus 71 3C protease. J Mol Biol 2011, 408(3):449-461. Lu G, Gonzalez R, Guo L, Wu C, Wu J, Vernet G, Paranhos-Baccala G, Wang J, Hung T: Large-scale seroprevalence analysis of human metapneumovirus and human respiratory syncytial virus infections in Beijing, China. Virol J 2011, 8:62. Liu X, Lei X, Zhou Z, Sun Z, Xue Q, Wang J, Hung T: Enterovirus 71 induces degradation of TRIM38, a potential E3 ubiquitin ligase. Virol J 2011, 8(1):61. Yang Y, Huang F, Gonzalez R, Wang W, Lu G, Li Y, Vernet G, Jin Q, Wang J: Evaluation of twelve real-time reverse transcriptase PCR primer-probe sets for detection of pandemic influenza A/H1N1 2009 virus. J Clin Microbiol 2011, 49(4):1434-1440. Wang Y, Gonzalez R, Zhou H, Li J, Li Y, Paranhos-Baccala G, Vernet G, Guo L, Wang J: Detection of human bocavirus 3 in China. Eur J Clin Microbiol Infect Dis 2011, 30(6):799-805. Li X, Yang Y, Zhou F, Zhang Y, Lu H, Jin Q, Gao L: SLC11A1 (NRAMP1) polymorphisms and tuberculosis susceptibility: updated systematic review and meta-analysis. PLoS One 2011, 6(1):e15831. Zheng J, Wei C, Zhao L, Liu L, Leng W, Li W, Jin Q: Combining blue native polyacrylamide gel electrophoresis with liquid chromatography tandem mass spectrometry as an effective strategy for analyzing potential membrane protein complexes of Mycobacterium bovis bacillus Calmette-Guerin. BMC Genomics 2011, 12:40. Zhou F, Kominski GF, Qian HZ, Wang J, Duan S, Guo Z, Zhao X: Expenditures for the care of HIV-infected patients in rural areas in China's antiretroviral therapy programs. BMC Med 2011, 9:6. Ren L, Gonzalez R, Xu J, Xiao Y, Li Y, Zhou H, Li J, Yang Q, Zhang J, Chen L, Wang W, Vernet G, Paranhos-Baccala G, Wang Z, Wang J: Prevalence of human coronaviruses in adults with acute respiratory tract infections in Beijing, China. J Med Virol 2011, 83(2):291-297. Liu Z, Shan M, Li L, Lu L, Meng S, Chen C, He Y, Jiang S, Zhang L: In vitro selection and characterization of HIV-1 variants with increased resistance to sifuvirtide, a novel HIV-1 fusion inhibitor. J Biol Chem 2011, 286(5):3277-3287. Zhong H, Lei X, Qin L, Wang J, Hung T: Augmentation of adenovirus 5 vector-mediated gene transduction under physiological pH conditions by a chitosan/NaHCO3 solution. Gene Ther 2011, 18(3):232-239. Yongfeng H, Fan Y, Jie D, Jian Y, Ting Z, Lilian S, Jin Q: Direct pathogen detection from swab samples using a new high-throughput sequencing technology. Clin Microbiol Infect 2011, 17(2):241-244.