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IPB publications - 2013

  • Gao X, Zou T, Mu Z, Qin B, Yang J, Waltersperger S, Wang M, Cui S, Jin Q: Structural insights into VirB-DNA complexes reveal mechanism of transcriptional activation of virulence genes. Nucleic Acids Res 2013, 41(22):10529-10541.
  • Liu T, Ren X, Xiao T, Yang J, Xu X, Dong J, Sun L, Chen R, JJin Q: Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum. BMC Genomics 2013, 14:931.
  • Ren X, Yang F, Hu Y, Zhang T, Liu L, Dong J, Sun L, Zhu Y, Xiao Y, Li L, Yang J, Wang J, Jin Q: Full genome of influenza A (H7N9) virus derived by direct sequencing without culture. Emerg Infect Dis 2013, 19(11):1881-1884.
  • Huang H, Kang R, Wang J, Luo G, Yang W, Zhao Z: Hepatitis C virus inhibits AKT-tuberous sclerosis complex (TSC), the mechanistic target of rapamycin (MTOR) pathway, through endoplasmic reticulum stress to induce autophagy. Autophagy 2013, 9(2):175-195.
  • Zhang D, Chen CF, Zhao BB, Gong LL, Jin WJ, Liu JJ, Wang JF, Wang TT, Yuan XH, He YW: A novel antibody humanization method based on epitopes scanning and molecular dynamics simulation. PLoS One 2013, 8(11):e80636.
  • Zheng J, Liu L, Wang J, Jin Q: Urinary proteomic and non-prefractionation quantitative phosphoproteomic analysis during pregnancy and non-pregnancy. BMC Genomics 2013, 14(1):777.
  • Yang Y, Li X, Cui W, Guan L, Shen F, Xu J, Zhou F, Li M, Gao C, Jin Q, Liu J, Gao L: Potential association of pulmonary tuberculosis with genetic polymorphisms of toll-like receptor 9 and interferon-gamma in a Chinese population. BMC Infect Dis 2013, 13(1):511.
  • Zhao BB, Zheng SJ, Gong LL, Wang Y, Chen CF, Jin WJ, Zhang D, Yuan XH, Guo J, Duan ZP, He YW: T Lymphocytes from Chronic HCV-Infected Patients Are Primed for Activation-Induced Apoptosis and Express Unique Pro-Apoptotic Gene Signature. PLoS One 2013, 8(10):e77008.
  • Qian Z, Dominguez SR, Holmes KV: Role of the Spike Glycoprotein of Human Middle East Respiratory Syndrome Coronavirus (MERS-CoV) in Virus Entry and Syncytia Formation. PLoS One 2013, 8(10):e76469.
  • Yang G, Waterfield NR: The Role of TcdB and TccC Subunits in Secretion of the Photorhabdus Tcd Toxin Complex. PLoS Pathog 2013, 9(10):e1003644.
  • Ren L, Xiao Y, Li J, Chen L, Zhang J, Vernet G, Wang J: Multiple genomic recombination events in the evolution of saffold cardiovirus. PLoS One 2013, 8(9):e74947.
  • Li W, Gao Z, Yang C, Li J, Li L, Lv R, Liu Z: The estimation of prevalence, incidence, and residual risk of transfusion-transmitted human hepatitis B infection from blood donated at the anhui blood center, china, from 2009 to 2011. PLoS One 2013, 8(9):e73472.
  • Mu Z, Wang B, Zhang X, Gao X, Qin B, Zhao Z, Cui S: Crystal Structure of 2A Proteinase from Hand, Foot and Mouth Disease Virus. J Mol Biol 2013, 425(22):4530-4543.
  • Pang X, Hu S, Li J, Xu F, Mei S, Zhou J, Cen S, Jin Q, Guo F: Identification of novel key amino acids at the interface of the transmembrane domains of human BST-2 and HIV-1 Vpu. Retrovirology 2013, 10(1):84.
  • Wu Z, Du J, Zhang T, Xue Y, Yang F, Jin Q: Recombinant human coxsackievirus b3 from children with acute myocarditis in china. J Clin Microbiol 2013, 51(9):3083-3086.
  • Zhang Y, Liu H, Wang L, Yang F, Hu Y, Ren X, Li G, Yang Y, Sun S, Li Y, Chen X, Li X, Jin Q: Comparative study of the cytokine/chemokine response in children with differing disease severity in enterovirus 71-induced hand, foot, and mouth disease. PLoS One 2013, 8(6):e67430.
  • Zhang T, Du J, Xue Y, Su H, Yang F, Jin Q: Epidemics and Frequent Recombination within Species in Outbreaks of Human Enterovirus B-Associated Hand, Foot and Mouth Disease in Shandong China in 2010 and 2011. PLoS One 2013, 8(6):e67157.
  • Wang B, Zhang X, Zhao Z: Validation-based insertional mutagenesis for identification of Nup214 as a host factor for EV71 replication in RD cells. Biochem Biophys Res Commun 2013, 437(3):452-456.
  • Cai P, Piao X, Liu S, Hou N, Wang H, Chen Q: MicroRNA-Gene Expression Network in Murine Liver during Schistosoma japonicum Infection. PLoS One 2013, 8(6):e67037.
  • Cheng M, Si Y, Niu Y, Liu X, Li X, Zhao J, Jin Q, Yang W: High-Throughput Profiling of Alpha Interferon- and Interleukin-28B-Regulated MicroRNAs and Identification of let-7s with Anti-Hepatitis C Virus Activity by Targeting IGF2BP1. J Virol 2013, 87(17):9707-9718.
  • Li K, Guo J, Zhao R, Xue Y, Chen L, Yang J, Peng J, Jin Q: Prevalence of 10 human polyomaviruses in fecal samples from children with acute gastroenteritis: a case-control study. J Clin Microbiol 2013, 51(9):3107-3109.
  • Bai H, Chen T, Ming J, Sun H, Cao P, Fusco DN, Chung RT, Chorev M, Jin Q, Aktas BH: Dual activators of protein kinase R (PKR) and protein kinase R-like kinase PERK identify common and divergent catalytic targets. Chembiochem 2013, 14(10):1255-1262.
  • Ren X, Wang Y, Zhang XS, Jin Q: iPcc: a novel feature extraction method for accurate disease class discovery and prediction. Nucleic Acids Res 2013, 41(14):e143.
  • Zhao J, Si Y, Cheng M, Yang Y, Niu Y, Li X, Liu X, Yang W: Albumin Fusion of Interleukin-28B: Production and Characterization of Its Biological Activities and Protein Stability. PLoS One 2013, 8(5):e64301.
  • Yang L, Wu Z, Ren X, Yang F, He G, Zhang J, Dong J, Sun L, Zhu Y, Du J, Zhang S, Jin Q: Novel SARS-like Betacoronaviruses in Bats, China, 2011. Emerg Infect Dis 2013, 19(6):989-991.
  • Zhou F, Li M, Li X, Yang Y, Gao C, Jin Q, Gao L: Seroprevalence of Entamoeba histolytica Infection among Chinese Men Who Have Sex with Men. PLoS Negl Trop Dis 2013, 7(5):e2232.
  • Zheng J, Ren X, Wei C, Yang J, Hu Y, Liu L, Xu X, Wang J, Jin Q: Analysis of the Secretome and Identification of Novel Constituents from Culture Filtrate of Bacillus Calmette-Guerin Using High-resolution Mass Spectrometry. Mol Cell Proteomics 2013, 12(8):2081-2095.
  • Zhang X, Zhao B, Huang H, Zhu Y, Peng J, Dai G, Jiang G, Liu L, Zhao Y, Jin Q: Co-occurrence of amikacin-resistant and -susceptible Mycobacterium tuberculosis isolates in clinical samples from Beijing, China. J Antimicrob Chemother 2013, 68(7):1537-1542.
  • Zheng J, Liu C, Liu L, Jin Q: Characterisation of a thermo-alkali-stable lipase from oil-contaminated soil using a metagenomic approach. Syst Appl Microbiol 2013, 36(3):197-204.
  • Wan C, Sun J, Chen W, Yuan X, Chong H, Prabakaran P, Dimitrov DS, He Y: Epitope Mapping of M36, a Human Antibody Domain with Potent and Broad HIV-1 Inhibitory Activity. PLoS One 2013, 8(6):e66638.
  • Xiang Z, Xie Z, Wang Z, Ren L, Xiao Y, Li L, Vernet G, Paranhos-Baccala G, Shen K, Wang J: Human enterovirus genotype C104, China. Emerg Infect Dis 2013, 19(4):689-691.
  • Cai P, Piao X, Hao L, Liu S, Hou N, Wang H, Chen Q: A Deep Analysis of the Small Non-Coding RNA Population in Schistosoma japonicum Eggs. PLoS One 2013, 8(5):e64003.
  • Wang B, Xi X, Lei X, Zhang X, Cui S, Wang J, Jin Q, Zhao Z: Enterovirus 71 Protease 2A(pro) Targets MAVS to Inhibit Anti-Viral Type I Interferon Responses. PLoS Pathog 2013, 9(3):e1003231.
  • Guo L, Wu C, Zhou H, Paranhos-Baccala G, Vernet G, Jin Q, Wang J, Hung T: Identification of a Nonstructural DNA-Binding Protein (DBP) as an Antigen with Diagnostic Potential for Human Adenovirus. PLoS One 2013, 8(3):e56708.
  • Xi X, Han X, Li L, Zhao Z: Identification of a New Tuberculosis Antigen Recognized by gammadelta T Cell Receptor. Clin Vaccine Immunol 2013, 20(4):530-539.
  • Zhang X, Yu J, Li M, Sun X, Han Q, Zhou F, Li X, Yang Y, Xiao D, Ruan Y, Jin Q, Gao L: Prevalence and Related Risk Behaviors of HIV, Syphilis, and Anal HPV Infection Among Men who have Sex with Men from Beijing, China. AIDS Behav 2013, 17(3):1129-1136.
  • Shao RX, Zhang L, Hong Z, Goto K, Cheng D, Chen WC, Jilg N, Kumthip K, Fusco DN, Peng LF, Chung RT: SOCS1 abrogates IFN's antiviral effect on hepatitis C virus replication. Antiviral Res 2013, 97(2):101-107.
  • Chong H, Yao X, Qiu Z, Sun J, Zhang M, Waltersperger S, Wang M, Liu SL, Cui S, He Y: Short-peptide fusion inhibitors with high potency against wild-type and enfuvirtide-resistant HIV-1. FASEB J 2013, 27(3):1203-1213.
  • He Y: Synthesized Peptide Inhibitors of HIV-1 gp41-dependent Membrane Fusion. Curr Pharm Des 2013, 19(10):1800-1809.
  • Ren X, Wang Y, Chen L, Zhang XS, Jin Q: ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions. Nucleic Acids Res 2013, 41(4):e53.
  • Peng J, Gao L, Guo J, Wang T, Wang L, Yao Q, Zhu H, Jin Q: Type-Specific Detection of 30 Oncogenic Human Papillomaviruses by Genotyping both E6 and L1 Genes. J Clin Microbiol 2013, 51(2):402-408.
  • Xi X, Zhang X, Wang B, Wang T, Wang J, Huang H, Jin Q, Zhao Z: The Interplays between Autophagy and Apoptosis Induced by Enterovirus 71. PLoS One 2013, 8(2):e56966.
  • Huang H, Kang R, Wang J, Luo G, Yang W, Zhao Z: Hepatitis C virus inhibits AKT-tuberous sclerosis complex (TSC), the mechanistic target of rapamycin (MTOR) pathway, through endoplasmic reticulum stress to induce autophagy. Autophagy 2013, 9(2):175-195.
  • Lei X, Xiao X, Xue Q, Jin Q, He B, Wang J: Cleavage of Interferon Regulatory Factor 7 by Enterovirus 71 3C Suppresses Cellular Responses. J Virol 2013, 87(3):1690-1698.
  • Liu X, Huang Y, Cheng M, Pan L, Si Y, Li G, Niu Y, Zhao L, Zhao J, Li X, Chen Y, Yang W: Screening and Rational Design of Hepatitis C Virus Entry Inhibitory Peptides Derived from GB Virus A NS5A. J Virol 2013, 87(3):1649-1657.
  • Peng J, Yang F, Xiong Z, Guo J, Du J, Hu Y, Jin Q: Sensitive and rapid detection of viruses associated with hand foot and mouth disease using multiplexed MALDI-TOF analysis. J Clin Virol 2013, 56(2):170-174.
  • Wang J, Du J, Wu Z, Jin Q: Quinacrine impairs enterovirus 71 RNA replication by preventing binding of polypyrimidine-tract binding protein with internal ribosome entry sites. PLoS One 2013, 8(1):e52954.
  • Li X, Gao L, Li H, Gao J, Yang Y, Zhou F, Gao C, Li M, Jin Q: Human papillomavirus infection and laryngeal cancer risk: a systematic review and meta-analysis. J Infect Dis 2013, 207(3):479-488.
  • Xiang Z, Gonzalez R, Ren L, Xiao Y, Chen L, Zhang J, Wang W, Yang Q, Li J, Zhou H, Vernet G, Paranhos-Baccala G, Wang Z, Wang J: Prevalence and clinical characteristics of human respiratory syncytial virus in Chinese adults with acute respiratory tract infection. J Med Virol 2013, 85(2):348-353.
  • Lu G, Li J, Xie Z, Liu C, Guo L, Vernet G, Shen K, Wang J: Human metapneumovirus associated with community-acquired pneumonia in children in Beijing, China. J Med Virol 2013, 85(1):138-143.


Copyright © 2013 Institute of Pathogen Biology, CAMS & PUMC